.. transcov documentation master file, created by sphinx-quickstart on Fri Apr 3 08:27:23 2020. You can adapt this file completely to your liking, but it should at least contain the root `toctree` directive. Welcome ======= Transcov is a bioinformatics software for mapping coverage around Transcription Start Sites (TSS'). Transcov will help you with the following: * Extract data from bam files * Build a data structure * Manipulating the data structure, like aggregating across samples * Explore coverage around TSS'. .. warning:: The documentation is still under construction, so a lot of information will be missing. I hope to have the basic documentation up and running soon. The API is up to date and an installation guide can be found under installation. .. toctree:: :maxdepth: 2 :caption: Contents: introduction usage/installation usage/tutorial api Indices and tables ================== * :ref:`genindex` * :ref:`modindex` * :ref:`search`